rs61760836 chr1:6245232 C>A
- Sequence
agcggcctgcgctgccccctggtg[C/A]ccgagagcgccgccggcagcacca
- ASB in cell types
- WA09 (embryonic stem cells) WA01 (H1, human embryonic stem cells) thymus-derived CD34- cells spleen
- ASB for transcription factors
- BC11B_HUMAN JUN_HUMAN SMRC1_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | n/a | 2.78 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | -0.07 | 1.43 | 2.25 | n/a | No Hit | |||
| SMRC1_HUMAN | 0.56 | 1.16 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.31 | 0.52 | 1.15 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Pancreas, Spleen, Testis, Thyroid