rs61760836 chr1:6245232 C>A

Sequence
agcggcctgcgctgccccctggtg[C/A]ccgagagcgccgccggcagcacca
ASB in cell types
WA09 (embryonic stem cells) WA01 (H1, human embryonic stem cells) thymus-derived CD34- cells spleen
ASB for transcription factors
BC11B_HUMAN JUN_HUMAN SMRC1_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BC11B_HUMAN n/a 2.78 1.003.1·10-4 2.00 n/a n/a
JUN_HUMAN -0.07 1.43 1.005.5·10-4 2.25 n/a No Hit
SMRC1_HUMAN 0.56 1.16 0.950.01 1.00 n/a n/a
STAG1_HUMAN -0.31 0.52 1.000.01 1.15 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Nerve_Tibial,  Pancreas,  Spleen,  Testis,  Thyroid

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