rs61760837 chr1:6245243 C>A
- Sequence
ctgccccctggtgcccgagagcgc[C/A]gccggcagcaccatggacagcgcc
- ASB in cell types
- AG04449 (fibroblasts) thymus-derived CD34- cells MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- BC11B_HUMAN JUN_HUMAN CDN1B_HUMAN SMRC1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | n/a | 2.94 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 0.06 | 1.66 | 2.11 | n/a | No Hit | |||
| CDN1B_HUMAN | 0.06 | 2.15 | 2.50 | n/a | n/a | |||
| SMRC1_HUMAN | 0.73 | 1.32 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.20 | 0.52 | 1.15 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Pancreas, Spleen, Testis, Thyroid