rs61781377 chr1:39609786 C>T
- Sequence
ggtggcctgcagtgttcaaagcgc[C/T]ctctggcggccgggaggagcgggg
- ASB in cell types
- K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells) GM23338 bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN CHAP1_HUMAN KDM1A_HUMAN HDAC2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.38 | 0.20 | 2.32 | -6.53 | Concordant | |||
| CHAP1_HUMAN | 3.32 | n/a | 1.00 | n/a | n/a | |||
| KDM1A_HUMAN | 2.00 | -1.53 | 1.00 | n/a | n/a | |||
| HDAC2_HUMAN | 1.99 | -1.23 | 1.00 | n/a | n/a | |||
| ARI1B_HUMAN | 2.49 | -2.03 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood