rs61839105 chr10:38529508 G>T
- Sequence
aatggaatgaaatggaatagaacg[G/T]actgcaatggaatggagtggaatg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HCT-116 (colon carcinoma) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN RING2_HUMAN SQSTM_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.31 | 1.33 | 2.36 | n/a | No Hit | |||
| RING2_HUMAN | -5.17 | 3.09 | 2.00 | n/a | n/a | |||
| SQSTM_HUMAN | -1.17 | 1.85 | 3.00 | n/a | n/a | |||
| GCR_HUMAN | 0.18 | 1.81 | 2.14 | 3.47 | Concordant | |||
| CLOCK_HUMAN | -1.38 | 1.75 | 3.00 | n/a | No Hit |
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Motif analysis
