rs61960376 chr13:49858664 T>C

Sequence
cattgctactgtttacagtagaca[T/C]tccaaccctgaaaactaaactctg
ASB in cell types
VCaP (prostate carcinoma) primary prostate cancer 22RV1 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.49 0.48 5.0·10-51.00 1.67 n/a No Hit
ANDR_HUMAN 1.17 0.20 1.4·10-31.00 1.68 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Stomach,  Thyroid

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