rs62117903 chr19:16111515 G>C

Sequence
ccgccaggctgccggcgcgcgagc[G/C]gttggcgccgctccctgccttccc
ASB in cell types
spleen 22RV1 (prostate carcinoma) K562 (myelogenous leukemia) CD14+ monocytes
ASB for transcription factors
CTCF_HUMAN ANDR_HUMAN STAT1_HUMAN MYB_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.09 0.30 2.1·10-91.00 1.08 n/a No Hit
ANDR_HUMAN 3.16 -0.71 7.4·10-41.00 1.75 n/a No Hit
STAT1_HUMAN 2.31 0.78 1.8·10-30.88 2.33 n/a No Hit
MYB_HUMAN -0.15 2.31 1.004.8·10-3 2.38 0.96 Weak Concordant
SMC1A_HUMAN 1.77 -1.91 0.031.00 1.00 n/a n/a
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Motif analysis

MYB_HUMAN Weak Concordant
MYB_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid,  Whole_Blood

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