rs62162752 chr2:85418422 A>C
- Sequence
gacgcaggagagccacacgccagg[A/C]cgcgtgtaaggccccaacccggcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia) MDA-MB-453 (breast adenocarcinoma) U2OS (osteosarcoma)
- ASB for transcription factors
- MYC_HUMAN ZN687_HUMAN BRD2_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MYC_HUMAN | 0.05 | 2.14 | 1.39 | 1.59 | Weak Concordant | |||
| ZN687_HUMAN | -1.96 | 2.12 | 1.25 | n/a | n/a | |||
| BRD2_HUMAN | 0.19 | 1.44 | 2.12 | n/a | n/a | |||
| TYY1_HUMAN | -5.49 | 3.16 | 2.00 | n/a | No Hit | |||
| ZFX_HUMAN | -0.12 | 1.04 | 1.00 | 11.38 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood