rs62216681 chr21:41953072 A>G
- Sequence
cccgggactccaggcaaggcaggt[A/G]ctggctggcgcggatgagcacttc
- ASB in cell types
- 22RV1 (prostate carcinoma) keratinocytes K562 (myelogenous leukemia)
- ASB for transcription factors
- ANDR_HUMAN SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.55 | n/a | 2.00 | n/a | No Hit | |||
| SNAI2_HUMAN | -0.83 | 1.22 | 1.00 | 5.51 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid