rs62255964 chr3:56557037 A>C

Sequence
caaacggcacaaacggggcacaaa[A/C]ggggaacaaacggcatacgcaacc
ASB in cell types
CD14+ monocytes primary B-CLL cells adult erythroblasts
ASB for transcription factors
STAT1_HUMAN HCFC1_HUMAN SPT5H_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN -0.12 2.13 0.800.01 3.00 n/a No Hit
HCFC1_HUMAN n/a 2.57 1.000.02 3.00 n/a n/a
SPT5H_HUMAN -1.63 2.19 1.000.04 1.00 n/a n/a
Items per page:
1 – 3 of 3

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Thyroid,  Vagina,  Whole_Blood

Download