rs62259316 chr3:58300320 C>T
- Sequence
acagctccctcttgtgcctaacta[C/T]gtaagtagcaggtcctgatttttt
- ASB in cell types
- HMEC (human mammary epithelial cells) 697 (B acute lymphoblastic leukemia with t(1;19)(q23;p13.3) E2A-PBX1 (TCF3-PBX1)) liver Kelly (neuroblastoma)
- ASB for transcription factors
- SMC1A_HUMAN RAD21_HUMAN CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC1A_HUMAN | 2.77 | 0.06 | 1.20 | n/a | n/a | |||
| RAD21_HUMAN | 1.86 | -0.38 | 1.48 | n/a | n/a | |||
| CTCF_HUMAN | 1.27 | 0.51 | 1.30 | n/a | No Hit | |||
| STAG1_HUMAN | 1.17 | 0.04 | 1.00 | n/a | n/a | |||
| STAG2_HUMAN | 2.54 | -2.26 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Coronary, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid