rs62283326 chr3:197599306 C>T
- Sequence
cagatgacaactccggggggacct[C/T]gccccacgtgggaaggcactgctc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) RH4 (alveolar rhabdomyosarcoma)
- ASB for transcription factors
- MEF2B_HUMAN RAD51_HUMAN TRI22_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | n/a | 3.37 | 2.00 | n/a | No Hit | |||
| RAD51_HUMAN | -2.69 | 2.77 | 1.00 | n/a | n/a | |||
| TRI22_HUMAN | -0.26 | 2.47 | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | 0.06 | 1.86 | 1.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Sigmoid, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid