rs62381706 chr5:122492827 A>T
- Sequence
cgtgttaagtggcagaagcagaat[A/T]agaacccaggtctagcacagagtt
- ASB in cell types
- GM17942 (lymphoblastoid cell) GM02255 (Lymphoblastoid Cell Lines) bipolar neuron right lobe of liver
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.79 | 0.33 | 1.34 | n/a | No Hit | |||
| STAG1_HUMAN | 1.50 | -0.75 | 1.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Colon_Transverse, Esophagus_Mucosa, Lung, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Vagina