rs62384243 chr5:140720177 C>T
- Sequence
ggagcttgcagtgagccgagattg[C/T]gcaactgcactccagcctgggcga
- ASB in cell types
- K562 (myelogenous leukemia) SU-DHL-1 (Anaplastic large cell lymphoma) macrophages GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CEBPB_HUMAN CEBPG_HUMAN ATF3_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 2.09 | -3.66 | 1.88 | -7.02 | Concordant | |||
| CEBPG_HUMAN | 1.46 | n/a | 2.00 | 1.97 | Weak Discordant | |||
| ATF3_HUMAN | 2.31 | n/a | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.75 | 0.91 | 1.23 | n/a | No Hit | |||
| IRF9_HUMAN | 2.18 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood