rs62422552 chr6:169868611 C>T

Sequence
gggccctacggcctccacccccgc[C/T]atgcagctctgcagctgtagcctg
ASB in cell types
Kasumi-1 (acute myeloblastic leukemia) RH4 (alveolar rhabdomyosarcoma)
ASB for transcription factors
MTG8_HUMAN LDB1_HUMAN MYOD1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTG8_HUMAN -0.51 1.72 1.006.9·10-4 1.50 n/a n/a
LDB1_HUMAN -1.54 2.64 1.009.1·10-3 1.33 n/a n/a
MYOD1_HUMAN -0.91 1.72 1.009.6·10-3 1.11 n/a No Hit
Items per page:
1 – 3 of 3

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Brain_Cortex,  Thyroid

Download