rs62445003 chr7:38345654 A>G
- Sequence
ctgagacacaggcagagagaagtg[A/G]ctgaggatgtgtcttaggggactc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) glioblastoma cells MCF10AT1 (breast premetastatic epithelial cells) GM10847 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN IKZF2_HUMAN IKZF1_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.87 | 0.34 | 1.64 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.52 | -1.95 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 2.23 | -1.05 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 2.09 | -0.72 | 1.17 | n/a | n/a | |||
| ZN143_HUMAN | 2.59 | -2.46 | 1.00 | n/a | No Hit |
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