rs62461373 chr7:44973936 C>G
- Sequence
cctctgtgttcccaggggctccca[C/G]cagggggaggctcagagtctgtgg
- ASB in cell types
- THP-1 (acute monocytic leukemia) foreskin keratinocyte GM10847 (female B-cells Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.22 | 0.33 | 1.49 | -0.85 | Weak Concordant | |||
| RAD21_HUMAN | 1.15 | 0.21 | 1.23 | n/a | n/a | |||
| STAG1_HUMAN | 1.60 | -0.75 | 1.13 | n/a | n/a | |||
| SMC1A_HUMAN | 1.64 | -1.32 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Lung, Spleen, Testis, Thyroid, Whole_Blood