rs62465637 chr7:101411389 C>G
- Sequence
cacggccacgtctgtgcttgagag[C/G]gcgccctctggtggtagatagagg
- ASB in cell types
- CD34+ hematopoietic stem cells MS-1 (Small cell lung carcinoma) neutrophils CD34+ stem cells-derived erythroblasts
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.08 | 0.06 | 1.17 | n/a | n/a | |||
| CTCF_HUMAN | 0.98 | 0.73 | 1.32 | 2.66 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid