rs62490656 chr7:149787710 C>T
- Sequence
gttgggctcgggcccgctgtgggg[C/T]gctgctgcagccgctcttcacatt
- ASB in cell types
- K562 (myelogenous leukemia) upper lobe of left lung HUES64 (embryonic stem cells)
- ASB for transcription factors
- EP400_HUMAN CTCF_HUMAN CTBP1_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP400_HUMAN | 3.28 | n/a | 1.50 | n/a | n/a | |||
| CTCF_HUMAN | 1.94 | -0.55 | 1.27 | -2.45 | Concordant | |||
| CTBP1_HUMAN | 3.10 | n/a | 1.50 | n/a | n/a | |||
| MNT_HUMAN | 2.38 | -3.84 | 1.50 | n/a | n/a | |||
| RB_HUMAN | 3.02 | -4.97 | 1.50 | n/a | n/a |
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Motif analysis
