rs62638119 chr10:41884437 G>A
- Sequence
tggaatggaatggaatggaatgga[G/A]tagaatgtaaaggaatggaatgga
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- SMCA5_HUMAN MCM7_HUMAN MCM5_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCA5_HUMAN | 2.82 | n/a | 1.00 | 2.09 | Discordant | |||
| MCM7_HUMAN | 2.71 | -0.79 | 1.50 | n/a | n/a | |||
| MCM5_HUMAN | 2.89 | -2.78 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 2.16 | -4.00 | 1.50 | n/a | No Hit | |||
| KAISO_HUMAN | 3.07 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
