rs6413504 chr19:11131239 A>G

Sequence
gtggcctccagccgtgtttcctga[A/G]tgctggactgatagtttccgctgt
ASB in cell types
HEK293 (embryonic kidney) neutrophils from periferal blood K562 (myelogenous leukemia)
ASB for transcription factors
GLIS1_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GLIS1_HUMAN n/a 3.04 1.008.2·10-5 2.00 n/a n/a
RAD21_HUMAN 2.65 0.12 0.040.90 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP college completion,  hdl cholesterol,  height,  ldl cholesterol,  total cholesterol,  type 2 diabetes,  years of education
GTEx eQTL Artery_Aorta,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Cells_Cultured_fibroblasts,  Whole_Blood

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