rs6415509 chr8:130079780 T>A
- Sequence
aacgtctggtttcttgttgtggcc[T/A]gccccacttggctgaccacagctt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN IKZF1_HUMAN RUNX3_HUMAN SKIL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 1.80 | -1.63 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.58 | -1.48 | 1.00 | n/a | No Hit | |||
| RUNX3_HUMAN | 2.58 | -4.53 | 1.50 | -0.60 | Weak Concordant | |||
| SKIL_HUMAN | 2.47 | -0.69 | 1.50 | n/a | n/a | |||
| NFAC3_HUMAN | 2.38 | -2.07 | 1.00 | n/a | No Hit |
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Motif analysis
