rs6417105 chr18:49487353 A>T
- Sequence
cacagcacgcagcagtgttgccca[A/T]ggggcgcggcgaggcttccggctc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CEBPB_HUMAN RBM25_HUMAN STAT1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 2.12 | -0.06 | 1.45 | -4.09 | Concordant | |||
| RBM25_HUMAN | 1.49 | 0.41 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.31 | n/a | 3.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 0.98 | 2.19 | 1.12 | n/a | n/a | |||
| TYY1_HUMAN | 1.83 | 0.47 | 1.17 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Testis, Whole_Blood