rs6421171 chr12:51238480 T>C
- Sequence
ccgatttcaggcagtgcgacaaat[T/C]tgcagaaatctaagcccctcgtgg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) adrenal gland GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN KDM1A_HUMAN ILF3_HUMAN ZN626_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.02 | 1.79 | 1.33 | n/a | No Hit | |||
| KDM1A_HUMAN | -4.41 | 2.10 | 2.00 | n/a | n/a | |||
| ILF3_HUMAN | -1.09 | 2.35 | 2.00 | n/a | n/a | |||
| ZN626_HUMAN | n/a | 2.59 | 1.00 | n/a | n/a | |||
| HDAC1_HUMAN | 0.28 | 2.18 | 2.00 | n/a | n/a |
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