rs6424828 chr1:181937457 C>T

Sequence
accccctgccgccgtgatatgcaa[C/T]ttgcccatataacaaacctgcaca
ASB in cell types
foreskin keratinocyte pancreas GM02255 (Lymphoblastoid Cell Lines) hepatocytes
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.94 0.74 6.8·10-31.00 1.77 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  diabetic retinopathy in type 2 diabetes mellitus,  hdl cholesterol,  height,  ldl cholesterol,  microalbuminuria,  parkinsons disease,  urinary albumin-to-creatinine ratio,  years of education
GTEx eQTL Nerve_Tibial

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