rs6425399 chr1:176897458 A>T

Sequence
accttctaattatacgcatttcct[A/T]actgacccgcagccctccttgttg
ASB in cell types
T47D (invasive ductal carcinoma) foreskin keratinocyte vagina

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
T47D (invasive ductal carcinoma) 1.08 0.50 0.030.90 1.00
foreskin keratinocyte 0.51 n/a 0.031.00 2.67
vagina 2.27 -2.27 0.041.00 1.00
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Cerebellum

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