rs6425715 chr1:31185831 A>G
- Sequence
gactcagatgacactttcagaaac[A/G]tgttccaggtggtaagccactaga
- ASB in cell types
- CRC107 (colorectal cancer metastatic stem cells)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| CRC107 (colorectal cancer metastatic stem cells) | -0.97 | 1.79 | 1.00 |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease, birth weight, depression scale of the revised neo personality inventory, height, parkinsons disease, total cholesterol
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Nerve_Tibial, Thyroid, Whole_Blood