rs6425747 chr1:31397131 G>C
- Sequence
tgtgcctagatctgggggatgagt[G/C]ttgcaagcagtaagattactacag
- ASB in cell types
- MCF10A (breast epithelial cells) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- P63_HUMAN TCF21_HUMAN NCOA3_HUMAN TEAD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| P63_HUMAN | 2.09 | -0.44 | 1.31 | n/a | No Hit | |||
| TCF21_HUMAN | 1.84 | n/a | 3.00 | n/a | n/a | |||
| NCOA3_HUMAN | 2.33 | -2.15 | 1.00 | n/a | n/a | |||
| TEAD4_HUMAN | 1.58 | -1.58 | 1.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Spleen, Thyroid, Whole_Blood