rs6425756 chr1:31471569 A>C
- Sequence
ctattggctaggattggaccgcac[A/C]gtgtaagctaattccgattggcta
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- E2F1_HUMAN KDM1A_HUMAN PKNX1_HUMAN MITF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F1_HUMAN | 2.25 | -2.20 | 1.00 | n/a | No Hit | |||
| KDM1A_HUMAN | 2.48 | -0.58 | 1.00 | n/a | n/a | |||
| PKNX1_HUMAN | 0.79 | -0.85 | 1.50 | n/a | No Hit | |||
| MITF_HUMAN | 1.68 | -1.51 | 1.00 | n/a | No Hit | |||
| TIF1B_HUMAN | 2.33 | -2.17 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood