rs6425756 chr1:31471569 A>C

Sequence
ctattggctaggattggaccgcac[A/C]gtgtaagctaattccgattggcta
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
E2F1_HUMAN KDM1A_HUMAN PKNX1_HUMAN MITF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
E2F1_HUMAN 2.25 -2.20 6.1·10-41.00 1.00 n/a No Hit
KDM1A_HUMAN 2.48 -0.58 5.5·10-31.00 1.00 n/a n/a
PKNX1_HUMAN 0.79 -0.85 7.9·10-31.00 1.50 n/a No Hit
MITF_HUMAN 1.68 -1.51 8.3·10-31.00 1.00 n/a No Hit
TIF1B_HUMAN 2.33 -2.17 0.011.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  height,  homa-b,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Kidney_Cortex,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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