rs6425757 chr1:31471588 T>G
- Sequence
cgcacagtgtaagctaattccgat[T/G]ggctattttaaagagagcaggggt
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- E2F1_HUMAN TIF1B_HUMAN PKNX1_HUMAN PRD10_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F1_HUMAN | 1.75 | -1.32 | 1.00 | n/a | No Hit | |||
| TIF1B_HUMAN | 2.33 | -2.17 | 1.00 | n/a | n/a | |||
| PKNX1_HUMAN | 0.70 | -0.76 | 1.50 | n/a | No Hit | |||
| PRD10_HUMAN | -1.82 | 2.33 | 1.00 | n/a | n/a | |||
| KDM1A_HUMAN | 2.10 | -0.47 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid