rs6425820 chr1:33470746 C>T
- Sequence
gggcagatgatgctgaagtggaca[C/T]gtccttacctgaccctgcaaagct
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) SYO-1(Biphasic synovial sarcoma) CD34+ stem cells-derived erythroblasts GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- THB_HUMAN BRCA2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| THB_HUMAN | -2.56 | 2.91 | 1.00 | 6.32 | Concordant | |||
| BRCA2_HUMAN | -1.15 | 1.97 | 1.00 | n/a | n/a |
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Motif analysis
