rs6429165 chr1:239896757 G>A

Sequence
tgtttatcagcattgatagcgtct[G/A]cctactatatgtcagtagcacatt
ASB in cell types
SK-N-SH (neuroblastoma) BE2C
ASB for transcription factors
EP300_HUMAN HAND2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EP300_HUMAN 3.41 -3.40 2.6·10-51.00 1.00 n/a n/a
HAND2_HUMAN 2.35 -4.29 0.031.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP alzheimers disease,  chronic kidney disease,  height,  hypertension (early onset hypertension),  sporadic creutzfeldt-jakob disease

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