rs642962 chr1:31883490 T>C
- Sequence
tcaacctctcgggctcaagtgatc[T/C]tcccacctcagcctccccagtagg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN ZN770_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.43 | -0.53 | 1.00 | n/a | n/a | |||
| ZN770_HUMAN | -1.66 | 2.71 | 2.00 | 8.13 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Substantia_nigra, Esophagus_Muscularis, Heart_Atrial_Appendage, Thyroid