rs6429730 chr1:15229947 T>C
- Sequence
ttaaatggaatatgattttatctc[T/C]gtgtattgcttcaactctgggttt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN GATA3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.46 | 0.27 | 2.14 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.82 | 0.05 | 2.35 | n/a | No Hit | |||
| GATA3_HUMAN | 1.79 | n/a | 2.00 | -1.23 | Weak Concordant |
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Motif analysis
