rs6431670 chr2:15059995 C>T
- Sequence
aaaaacaaaaaaaaaaacactcca[C/T]gtagaagtgtcgtcatttaacaca
- ASB in cell types
- neural cell HEK293 (embryonic kidney)
- ASB for transcription factors
- ZIC2_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZIC2_HUMAN | -4.15 | 2.68 | 1.33 | n/a | n/a | |||
| SMC3_HUMAN | -2.43 | 2.54 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, waist hip ratio