rs6433327 chr2:151298218 A>G

Sequence
caagtgtatatgggaacttgaaag[A/G]ggtattctcttctctttcattaat
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) CAR-T cells
ASB for transcription factors
SUH_HUMAN IRF4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SUH_HUMAN 2.30 n/a 0.021.00 2.00 n/a No Hit
IRF4_HUMAN -0.21 1.89 1.000.04 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP acute lung injury following major trauma,  hdl cholesterol,  triglycerides,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Amygdala,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Thyroid,  Whole_Blood

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