rs6433890 chr2:181104653 T>A
- Sequence
cgctctcccttccttccctcttct[T/A]tccttctatttggtttctatcaat
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte GM12878 (female B-cells lymphoblastoid cell line) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- SMC3_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 1.61 | 1.09 | 1.61 | n/a | n/a | |||
| FOXK2_HUMAN | 0.45 | 2.38 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood