rs6437393 chr3:194633780 G>T
- Sequence
agggcgcagtaaaaagggtggggt[G/T]caagaccaggaaggaggaaacaaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ELF1_HUMAN FOXA1_HUMAN TBX3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | 2.87 | -2.54 | 1.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 2.40 | -0.27 | 1.62 | n/a | No Hit | |||
| TBX3_HUMAN | -0.40 | 2.00 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Ovary, Stomach, Thyroid