rs6438860 chr3:124886684 C>G
- Sequence
gggctaggtcagcaggccggccag[C/G]ctgtttacacaggaagggaagctc
- ASB in cell types
- MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MCF7 WS8 cells MCF7 (Invasive ductal breast carcinoma) MCF-7 C4-12 (invasive breast ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN KDM5B_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.98 | 0.54 | 1.59 | n/a | No Hit | |||
| KDM5B_HUMAN | 1.69 | -0.86 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | -0.52 | 2.21 | 1.75 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood