rs6439302 chr3:131526995 C>T
- Sequence
cgcccaagccgagcatgccccggg[C/T]ccccgcctccttcccaggagcccc
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) GM19240 (B cells Lymphoblastoid Cell Lines) pancreas esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.52 | 1.86 | 1.08 | n/a | No Hit | |||
| STAG1_HUMAN | 0.11 | 2.14 | 1.10 | n/a | n/a |
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