rs6439409 chr3:133466450 C>T
- Sequence
tcctagcactttgggaggccaagg[C/T]atgcggattacctgaggtcaggag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells lymphoblastoid cell line) | 0.97 | 0.66 | 1.01 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_EBV-transformed_lymphocytes, Colon_Transverse, Small_Intestine_Terminal_Ileum, Spleen