ADASTRA v5.1.3
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rs6441874
chr3:44976413
G
>
T
Sequence
tcgcggcctgccctgggtttgcca[G/T]tgaggaggcagccgagctgcggcg
ASB in cell types
RKO (colon carcinoma cell)
ASB for transcription factors
TYY1_HUMAN
RBBP5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN
-0.29
2.65
0.91
3.0·10
-3
1.50
n/a
No Hit
RBBP5_HUMAN
2.00
n/a
9.6·10
-3
1.00
2.50
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
autism
,
hdl cholesterol
GTEx eQTL
Artery_Aorta
,
Artery_Tibial
,
Brain_Cortex
,
Brain_Spinal_cord_cervical_c-1
,
Colon_Sigmoid
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)