rs6444025 chr3:185069841 A>G

Sequence
ccctgcagggggtgctggttgtct[A/G]ggaggacgcccaccgtggagggct
ASB in cell types
SU-DHL-2 (anaplastic large cell lymphoma)
ASB for transcription factors
ITF2_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ITF2_HUMAN n/a 2.76 1.000.02 2.00 n/a No Hit
CTCF_HUMAN 0.78 0.13 0.050.98 1.13 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  aortic valve calcium,  parkinsons disease
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hypothalamus,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Lung,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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