rs6445040 chr3:172140733 G>A
- Sequence
tgtaatgtcatgaggctgggttac[G/A]tcaataccaaactatgttgctttc
- ASB in cell types
- HEK293 (embryonic kidney) Ishikawa (endometrial adenocarcinoma) JB6 (Human anaplastic large cell lymphoma) embryonic stem cells derived definitive endoderm
- ASB for transcription factors
- CREB1_HUMAN PRDM4_HUMAN ZSCA4_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.81 | -1.05 | 1.33 | -2.89 | Concordant | |||
| PRDM4_HUMAN | 1.76 | -1.76 | 1.00 | n/a | n/a | |||
| ZSCA4_HUMAN | 2.96 | -5.04 | 1.50 | n/a | n/a | |||
| FOXA1_HUMAN | 0.91 | 0.53 | 1.54 | n/a | No Hit | |||
| TSH1_HUMAN | 2.82 | -2.48 | 1.00 | n/a | n/a |
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Motif analysis
