rs6450970 chr5:33241889 C>T
- Sequence
atcaatcaaaagccacacagaaaa[C/T]agaaaaaaaaaatcttccagacca
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) 22RV1 (prostate carcinoma) SKH1 (chronic myelogenous leukemia, BCR-ABL1 positive) primary endothelial colony-forming cells
- ASB for transcription factors
- ANDR_HUMAN TAL1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -2.21 | 3.00 | 2.00 | -1.48 | Weak Discordant | |||
| TAL1_HUMAN | -0.92 | 1.40 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Skin_Sun_Exposed_Lower_leg, Thyroid