rs6451130 chr5:34474631 A>G

Sequence
tttctccggagaagagcaaaatac[A/G]gaataccaaacctctcaaagctgt
ASB in cell types
A549 (lung carcinoma) foreskin keratinocyte K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
SMC3_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMC3_HUMAN 0.10 1.30 0.960.02 1.80 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting insulin homa-ir ldl cholesterol
GTEx eQTL Heart_Atrial_Appendage

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