rs6452483 chr5:72459366 G>A

Sequence
gcaaaactccctctcggaggctca[G/A]agcaggttccatactttagctggg
ASB in cell types
BEAS-2B (bronchial epithelium) GM01310 ( Transformed lymphovlasoid cell line )
ASB for transcription factors
GCR_HUMAN AHR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN -0.11 1.42 1.005.2·10-7 2.00 n/a No Hit
AHR_HUMAN -0.91 1.69 0.970.04 1.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cortex,  Esophagus_Muscularis,  Muscle_Skeletal,  Thyroid

Download