rs6453008 chr5:73519962 G>T

Sequence
cccttgctgcttgctcggagcatc[G/T]tggacccaaggtctggaagggcca
ASB in cell types
A549 (lung carcinoma) neutrophils from periferal blood pancreas HCT-116 (colon carcinoma)
ASB for transcription factors
RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN 1.20 0.40 9.1·10-51.00 1.65 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  hypertension (early onset hypertension),  parkinsons disease,  schizophrenia
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Lung,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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