rs6456272 chr6:19804805 C>G
- Sequence
accgcccggccggcgccagcggag[C/G]gggggaggcgggctccgtgaatgg
- ASB in cell types
- breast tumor MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) TTC-1240 (Rhabdoid tumor of the kidney) HASM2 (Human airway smooth muscle 2)
- ASB for transcription factors
- ESR1_HUMAN CDN1B_HUMAN SSXT_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.90 | -5.13 | 2.00 | n/a | No Hit | |||
| CDN1B_HUMAN | 0.15 | 1.16 | 1.00 | n/a | n/a | |||
| SSXT_HUMAN | 1.81 | -0.86 | 1.00 | n/a | n/a | |||
| GCR_HUMAN | 0.64 | 1.08 | 1.04 | n/a | No Hit |
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