rs6456497 chr6:22603330 G>A

Sequence
ttgttttcatggagtaaatgtgtc[G/A]atcatattgacacagatatggcct
ASB in cell types
LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.71 1.47 5.4·10-241.00 1.76 n/a No Hit
ANDR_HUMAN 2.94 -0.39 8.2·10-161.00 1.37 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP coronary artery disease (cad),  obesity with early age of onset (age >2),  total cholesterol

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