rs6456498 chr6:22603381 G>A

Sequence
gaaacagttgtatttgctaattta[G/A]actgataaactggcattctctttt
ASB in cell types
LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.13 -0.50 1.6·10-91.00 1.65 n/a No Hit
ANDR_HUMAN 2.33 -0.44 3.5·10-81.00 1.42 0.60 Weak Discordant
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Motif analysis

ANDR_HUMAN Weak Discordant
ANDR_HUMAN pic

Genetic associations

GRASP obesity with early age of onset (age >2),  simpson-angus scale,  total cholesterol,  triglycerides

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